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Dr. Ruhi Sikka

Dr. Ruhi Sikka

  • Assistant Professor
    Institute of Applied Sciences & Humanities
  • Department

    Department of Biotechnology
  • Contact Details:

    Email : ruhi.sikka@gla.ac.in

    Contact Number :9915893999

  • Experience

    1.5 Years

  • Qualifications

    • Pre-Ph.D.,course work in Research methodology, Application of cytogenetic methods, Applied human population genetics, Disaster management, Prevention and management of genetic diseases in 2011 from Guru Nanak Dev University with 83.2
    • M.Sc.(Hons)in Human Genetics,2007-2009 from Guru Nanak Dev University with 66.66
    • PG Diploma in Bioinformatics, 2006-2007 from Jamia Hamdard University with 58.9
    • B.Sc.(Hons)in Biotechnology,2003-2006 from Institute of Applied Medicine & Research, CCS University with 63.44
    • Intermediate in CBSE, 2003 with 62
    • High School in CBSE, 2001 with 63.2

     

  • Ph.D

    Thesis Supervised

  • Awarded/ Completed-NIL

    Working-NIL

  • Postgraduate

    Thesis Supervised

  • Awarded/ Completed-NIL

    Working-NIL

Research Publications

  • 01Raina, P., Sikka, R., Gupta, H., Matharoo, K., Bali, S.K., Singh, V and Bhanwer, AJS. (2020). Association of eNOS and MCP-1 Genetic Variants with Diabetic Nephropathy in Type 2 Diabetes. Journal of Biochemical Genetics (DOI: 10.1007/s10528-021-10041-2).
  • 02Kaur, R., Matharoo, K., Raina, P*., Sikka, R*., and Bhanwer, AJS. (2017). Interaction of Endothelial Nitric Oxide Synthase Gene Polymorphisms in T2D and CAD patients of Punjab (North-West India). International Journal of diabetes in the developing countries, 37: 286-297. (*Authors contributed equally to the manuscript).
  • 03Sokhi, J., Sikka, R., Raina, P., Kaur, R., Matharoo, M., Arora, P and Bhanwer, AJS. (2016). Association of genetic variants in INS (rs689), INSR (rs1799816) and PP1G.G (rs1799999) with Type 2 diabetes (T2D): A case-control study in three ethnic groups from North-West India. Molecular Journal of Genetics and Genomics,291: 205-216.
  • 04Raina, P., Sikka R., Kaur, R., Sokhi, J., Matharoo, K., Singh, V and Bhanwer, AJS. (2015). Association of transforming growth factor beta-1 (TGF-β1) genetic variation with type 2 diabetes and end stage renal disease in two large population samples from North India. OMICS: A Journal of Integrative Biology,19: 1-12.
  • 05Sikka, R*., Raina P*, Matharoo, K., Bandesh, K., Bhatia, R., Chakrabarti, S and Bhanwer, A.J.S. (2014). TNF-α (-308 G>A) and ADIPOQ (+45 T>G) gene polymorphisms in Type 2 diabetes and microvascular complications in the region of Punjab (North-West India). Current Eye Research, 39: 1042-1051.

Publications (submitted or in preparation)

  • 01Singh, G., Sharma, R., Raina, P., Kalotra, V., Sandhu, H.S., Sethi, I., Sharma, V., Sikka, R., Matharoo, K., Sokhi, J., Marwaha, A., Vig, V., Kapoor, R., Choudhary, M., Singh, V., Soneja, S., Sharma, S. and Bhanwer, AJS. Association of genetic variants of ELMO1 gene with diabetic nephropathy in the North-Indian population. (under review in Scientific Reports)
  • 02Ruhi Sikka, Priyanka Raina, Himanshu Gupta, Jay Chablani, Vipin Vig, Subhabrata Chakrabarti and AJS Bhanwer. Clinical risk factors associated with Diabetic Nephropathy and Diabetic Retinopathy in type 2 diabetic patients. (in preparation for Journal of Diabetes)
  • 03Ruhi Sikka, Jay Chablani, Vipin Vig, Subhabrata Chakrabarti and AJS Bhanwer. The major genetic and lifestyle risk factors associated with Diabetic Retinopathy in the population of Punjab: A case-control study. (in preparation for Scientific Reports)

Book Chapters/Conference Proceedings/Abstract Published

  • 01Leon, L.M.; Sikka, R; Zhang, W.; Li, L. and Khanna, H. (2019). ARVO Annual Meeting April 28-May 02, 2019. Regulation of RPGR (retinitis pigmentosa GTPase regulator) isoform expression by miRNAs: insights into retinitis pigmentosa pathogenesis (Abstract). Investigative Ophthalmology & Visual Science, Vol.60, 4925. doi:https://doi.org/
  • 02Sikka, R., Babu, I. R., Singh, G., Kaur, I., Chhablani, J., Bhanwer, AJS and Chakrabarti, S. (2017). Some insights on the genomics of diabetic retinopathy. Human Genomics & applications. Narendra Publishing House, Delhi.
  • 03Matharoo, K., Singh, Y.P., Sokhi, J., Sharma, R., Raina, P., Kaur, R. Sikka, R. and Bhanwer, AJS. (2017). Systematic Review: Type 2 Diabetes. Human Genomics & applications. Narendra Publishing House, Delhi.
  • 04Sikka, R., Vig, V., Chhablani, J., Bhanwer A.J.S. and Chakrabarti, S. (2017). Genomic Profile of Diabetic Retinopathy in a North Indian Population.Keystone Symposium on “Diabetes” from 22nd-26th January, 2017 held at Keystone, Colorado, USA.
  • 05Sikka, R., Chhablani, J., Bhanwer, A.J.S. and Chakrabarti, S. (2016). Variants across Multiple Candidate Genes Confer Susceptibility to Diabetic Retinopathy in a North Indian Population. European Society of Human Genetics (ESHG-EMPAG-2016) from 21st-24th May, 2016 at Barcelona, Spain.
  • 06Sikka, R., Bhanwer A.J.S. and Vig, V. (2015). Variants of ADIPOQ gene modulate susceptibility towards diabetic retinopathy in a North-West Indian population (Punjab). 22nd Annual meeting of the Indian Eye Research Group-ARVO India Chapter from 25th-26th July, 2015 at LV Prasad Eye Institute, Hyderabad.
  • 07Sikka, R., Chakrabarti, S and Bhanwer, A.J.S. (2014). Association of ADIPOQ variants with diabetic retinopathy in a North-West Indian population. 21st Annual meeting of the Indian Eye Research Group-ARVO India Chapter from 26th-27th July, 2014 at LV Prasad Eye Institute, Hyderabad.
  • 08Sikka, R., Matharoo, K, Chakrabarti, S and Bhanwer, AJS. (2014). Influence of ADIPOQ variants on retinal pigment in epithelial cells: a proposed role in diabetic retinopathy. 10th Indo-Australian Conference on Biotechnology, International Conference on "Epithelial Development & Disease-New Frontiers & Therapies" from 11th-13th April, 2014 at SOLS, Manipal University, Manipal.

Conferences Attended

  • 01Participated and presented poster in the Keystone Symposium on “Diabetes” held at Keystone, Colorado, USA from 22nd-26th January, 2017.
  • 02Participated in EMQN and UK NEQAS for molecular Genetics Meeting entitled “Next Generation Sequencing from 5` to 3`-the full NGS story” on 22nd May, 2016 at ESHG conference, Barcelona, Spain.
  • 03Participated and presented poster in European Society of Human Genetics (ESHG-EMPAG-2016) from 21st-24th May, 2016 at Barcelona, Spain.
  • 04Participated and presented poster in 22nd Annual meeting of the Indian Eye Research Group-ARVO India Chapter at LV Prasad Eye Institute, Hyderabad, from 25th-26th July, 2015.
  • 05Participated and presented poster in 21st Annual meeting of the Indian Eye Research Group-ARVO India Chapter at LV Prasad Eye Institute, Hyderabad, from 26th-27th July, 2014.
  • 06Participated and presented poster in 4th International Conference on "Epithelial Development & Disease-New Frontiers & Therapies" at SOLS, Manipal University, Manipal, from 11th-13th April, 2014.
  • 07Participated in National Seminar on Genes and Genomics at Department of Human Genetics, G.N.D.U, Amritsar from 21st-22nd February, 2014.
  • 08Participated in UGC-Sponsored National Seminar on Genetics of Mendelian and Complex Disorders at Department of Human Genetics, G.N.D.U, Amritsar 18th September, 2012.
  • 09Participated and presented poster in Indian Society of Human Genetics (ISHG)-2012 at Panjab University, Chandigarh, 3rd-5th March, 2012.
  • 10Participated in UGC sponsored National seminar on Genomics of complex Diseases at G.N.D.U, Amritsar on 2nd March, 2012.
  • 11Participated in National symposium on New Biotechnology Tools for the Diagnosis of Tuberculosis. NBE Institute & Auroprobe Laboratories, Abupur, Ghaziabad, 24th March, 2011.
  • 12Participated and presented poster in International symposium on Genetics and Epigenetic basis of Complex Diseases. Centre for Cellular and Molecular Biology, Hyderabad, 5th-7th December, 2009.
  • 13Participated in 5th International Symposium on Genetics, Health and Medicine held in G.N.D.U, Amritsar, 17th-19th February, 2008.

Workshop Attended

  • 01Participated and presented poster in Joint IUBMB-RCB Workshop on Diabetes and Metabolic Syndromes at RCB, Gurgaon, from 24th-29th November, 2014.
  • 02Participated in short term course in Advanced Workshop on Statistics for Ph.D./Post-Doctoral/ Faculty members at Academic staff college, G.N.D.U, Amritsar from 10th-12th February, 2014.
  • 03Participated in short term course in Workshop on Statistics for Ph.D./Post-Doctoral/Faculty members at Academic staff college, G.N.D.U, Amritsar from 27th-29th August, 2013.
  • 04Participated in NIBMG Winter School “Genetic dissection of a complex disease: analytical approach at NIBMG, Kalyani, 3rd-10th January, 2012.
  • 05Participated in 3rd Asian workshop in Genomics and Community Medicine at Guru Ram Rai medical Institute, Dehradun, from 19th-25th November, 2011.

Research Area

My interest is in understanding the molecular biology (both genomics & RNA biology) of Type 2 Diabetes and its complications and retinal disorders. How these DNA & RNA (especially small RNA molecules) play a significant role in disease phenotypes among different ethnic groups. I would like to use the findings in the development of miRNA-based therapeutics for these complex disorders. Also, to understand how lifestyle modifications can help the individuals to delay the disease manifestation and progression.

Work Experience

Pre-Doctoral Research Experience

Postdoctoral Research Associate at Khanna Lab, Department of Ophthalmology, UMASS Medical School, Worcester, MA (USA), January 2018 to December 2018. I was involved in strategizing the development of novel therapeutics for Retinitis Pigmentosa (RP) and Leber Congenital Amaurosis (LCA) as well as in preparing reports, presentations, and manuscripts. I worked with two NIH granted projects: 1) microRNA-based tools to explore molecular mechanisms of RP and 2) development of gene therapy using a mini-CEP290 fragment (mini-gene constructs) to delay photoreceptor degeneration in a mouse model of LCA.

Pre-Doctoral Research Experience

  • CSIR-SRF(July, 2015-July, 2016)Department of Human Genetics, G.N.D.U
    Project Title: Targeted genome analysis of two large diabetic retinopathy cohorts from Northern and Southern India.
  • Project Assistant(June, 2011 to March, 2012)Department of Human Genetics, G.N.D.U
    Project Title: UGC-SAP (DRS-I) Determination of genetic and lifestyle risk factors associated with type 2 diabetes and its complications.
  • BCIL Training, Auroprobe Laboratories(Dec, 2010 to May, 2011)
    Project Title:Diagnosis of Ankylosing Spondylitis an autoimmune disorder by targeting the specific gene HLA-B27 using PCR Technology.
  • M.Sc Dissertation (2007-2009)Department of Human Genetics, G.N.D.U
    Project Title:Cytogenetic damage studies in kidney disease patients undergoing standard hemodialysis therapy (twice per week).

Teaching subject specialization

  • Genetics & Genomics, Molecular biology, Immunology

Scientific Activities

  • Peer Reviewer: Journal of Diabetes (Wiley online library), Plos One, Molecular Vision Journal of Diabetes (Wiley online library), Plos One, Molecular Vision

Awards and Achievements

  • Bill and Melinda Gates Foundation Global Health Travel Award to attend the Keystone Symposium on “Diabetes and Obesity” held at Keystone, Colorado, USA from 22nd-26th January, 2017.
  • DST-SERB (Govt. of India) Young Scientist (Travel and Registration Fellowship) to participate and present the poster in the European Society of Human Genetics (ESHG) Conference, Barcelona, Spain from 21st-24th May, 2016.
  • Selected for ICMR-SRF-2016.
  • Selected for Basic Scientific Research fellowship for the meritorious students (UGC-BSR)-2015.
  • IERG meeting Travel Grant-2015 for the poster entitled “Variants of ADIPOQ gene modulate susceptibility towards Diabetic Retinopathy in a North-West Indian population (Punjab)” in 22nd Annual meeting of the Indian Eye Research Group-ARVO India Chapter at LV Prasad Eye Institute, Hyderabad, from 25th-26th July, 2015.
  • Best Poster Presentation Award for the poster entitled “Association Analysis of ADIPOQ gene Polymorphisms in a Diabetic Retinopathy Cohort from North India (Punjab)” in Joint IUBMB-RCB Workshop on Diabetes and Metabolic Syndromes at RCB, Gurgaon, from 24th-29th November, 2014.
  • Cleared All India Ph.D. eligibility test for the Department of Human Genetics, G.N.D.U, Amritsar in 2010.
  • Received third prize for Best Oral Presentation in the Department of Human Genetics, G.N.D.U, Amritsar during M.Sc.
  • Punjab State Council for Science and Technology Fellowship, Chandigarh (Punjab) in 2009.
  • Secured All India 14th rank in M.Sc. entrance exam for Department of Human Genetics, G.N.D.U, Amritsar in 2007.
  • SAF Madanjeet Singh Scholarship from South-Asia Foundation, UNESCO in 2007.